PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081381001
Common NameGSBRNA2T00081381001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23398.2 Da    PI: 9.4542
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081381001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72e-25958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien  nr vtfskRrng+ KKA+E+ vLCda+va+i+f+s+gk+ +y+
  GSBRNA2T00081381001  9 KRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIVFASNGKMTDYC 58
                         79*********************************************997 PP

2K-box58.92.2e-2071164199
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yqk sgk+l++ak+e+l++e++ +kke+++Lq e+Rhl+Ged++sL+lk+L+ +e+++e++l      K+e+l+++ ++ ++  +e+++ 
  GSBRNA2T00081381001  71 YQKLSGKKLWDAKHENLSNEIDMIKKENDSLQLELRHLKGEDIQSLNLKNLMGIEHAIEHGLD-----KMEFLMTKRRNEKMLVEENRQL 155
                          899***********************************************************6.....89******************** PP

                K-box  91 nkaLrkkle 99 
                            +L+++ +
  GSBRNA2T00081381001 156 SFQLQQQEM 164
                          ****99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.333161IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002659.30E-38280No hitNo description
SuperFamilySSF554551.2E-33296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-263859IPR002100Transcription factor, MADS-box
PfamPF014868.7E-1282159IPR002487Transcription factor, K-box
PROSITE profilePS5129710.77184165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP  60
SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDMIKKENDS LQLELRHLKG EDIQSLNLKN  120
LMGIEHAIEH GLDKMEFLMT KRRNEKMLVE ENRQLSFQLQ QQEMAIASNA RGMMMRDQNG  180
QFGYRVQPIQ PNLQEKIMSL VID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15189181Myocyte-specific enhancer factor 2B
1tqe_Q1e-15189181Myocyte-specific enhancer factor 2B
1tqe_R1e-15189181Myocyte-specific enhancer factor 2B
1tqe_S1e-15189181Myocyte-specific enhancer factor 2B
3kov_A1e-15289180Myocyte-specific enhancer factor 2A
3kov_B1e-15289180Myocyte-specific enhancer factor 2A
3kov_I1e-15289180Myocyte-specific enhancer factor 2A
3kov_J1e-15289180Myocyte-specific enhancer factor 2A
3p57_A1e-15289180Myocyte-specific enhancer factor 2A
3p57_B1e-15289180Myocyte-specific enhancer factor 2A
3p57_C1e-15289180Myocyte-specific enhancer factor 2A
3p57_D1e-15289180Myocyte-specific enhancer factor 2A
3p57_I1e-15289180Myocyte-specific enhancer factor 2A
3p57_J1e-15289180Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.250981e-139flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081381001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9679610.0KC967961.1 Brassica oleracea var. viridis PI.a (PI.a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674655.11e-146PREDICTED: floral homeotic protein PISTILLATA-like isoform X2
SwissprotP480071e-139PIST_ARATH; Floral homeotic protein PISTILLATA
TrEMBLA0A078I6R61e-149A0A078I6R6_BRANA; BnaA02g04770D protein
STRINGBra020093.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-140MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]